PLMD::analysis Namespace Reference

Classes
class	AnalysisBase
	This is the abstract base class to use for implementing new methods for analyzing the trajectory. More...
class	Average
	Provides the keyword AVERAGE More...
class	AverageVessel
class	Committor
	Provides the keyword COMMITTOR More...
class	DataCollectionObject
class	EuclideanDissimilarityMatrix
	Provides the keyword EUCLIDEAN_DISSIMILARITIES More...
class	FarthestPointSampling
	Provides the keyword LANDMARK_SELECT_FPS More...
class	Histogram
	Provides the keyword HISTOGRAM More...
class	LandmarkSelectionBase
class	LandmarkStaged
	Provides the keyword LANDMARK_SELECT_STAGED More...
class	OutputColvarFile
	Provides the keyword OUTPUT_ANALYSIS_DATA_TO_COLVAR More...
class	OutputPDBFile
	Provides the keyword OUTPUT_ANALYSIS_DATA_TO_PDB More...
class	PrintDissimilarityMatrix
	Provides the keyword PRINT_DISSIMILARITY_MATRIX More...
class	ReadAnalysisFrames
	Provides the keyword COLLECT_FRAMES More...
class	ReadDissimilarityMatrix
	Provides the keyword READ_DISSIMILARITY_MATRIX More...
class	ReselectLandmarks
	Provides the keyword RESELECT_LANDMARKS More...
class	SelectRandomFrames
	Provides the keyword LANDMARK_SELECT_RANDOM More...
class	SelectWithStride
	Provides the keyword LANDMARK_SELECT_STRIDE More...
class	WhamHistogram
	Provides the keyword WHAM_HISTOGRAM More...
class	WhamWeights
	Provides the keyword WHAM_WEIGHTS More...