| Action(const ActionOptions &) | PLMD::Action | explicit | 
  | ActionPilot(const ActionOptions &) | PLMD::ActionPilot | explicit | 
  | ActionWithArguments(const ActionOptions &) | PLMD::ActionWithArguments | explicit | 
  | activate() | PLMD::Action | virtual | 
  | addDependency(Action *) | PLMD::Action |  | 
  | addForcesOnArguments(const std::vector< double > &forces) | PLMD::ActionWithArguments |  | 
  | apply() | PLMD::generic::UpdateIf | inlinevirtual | 
  | beforeUpdate() | PLMD::generic::UpdateIf | virtual | 
  | bringBackInPbc(int i, double d1) const | PLMD::ActionWithArguments | inline | 
  | calculate() | PLMD::generic::UpdateIf | virtual | 
  | calculateFromPDB(const PDB &) | PLMD::Action |  | 
  | PLMD::calculateNumericalDerivatives(ActionWithValue *a=NULL) | PLMD::Action | virtual | 
  | PLMD::ActionWithArguments::calculateNumericalDerivatives(ActionWithValue *a=NULL) | PLMD::ActionWithArguments | virtual | 
  | checkNeedsGradients() const | PLMD::Action | inlinevirtual | 
  | checkNumericalDerivatives() const | PLMD::Action | inlinevirtual | 
  | checkRead() | PLMD::Action |  | 
  | checkUpdate() const | PLMD::Action |  | 
  | cite(const std::string &s) | PLMD::Action |  | 
  | clearDependencies() | PLMD::Action |  | 
  | clearOptions() | PLMD::Action | virtual | 
  | comm | PLMD::Action |  | 
  | deactivate() | PLMD::Action | inlinevirtual | 
  | Dependencies typedef | PLMD::Action |  | 
  | difference(int, double, double) const | PLMD::ActionWithArguments | inline | 
  | end | PLMD::generic::UpdateIf | private | 
  | error(const std::string &msg) const | PLMD::Action |  | 
  | exit(int c=0) | PLMD::Action |  | 
  | expandArgKeywordInPDB(PDB &pdb) | PLMD::ActionWithArguments | protected | 
  | fclose(FILE *fp) | PLMD::Action |  | 
  | fflush() | PLMD::Action |  | 
  | files | PLMD::Action |  | 
  | fopen(const char *path, const char *mode) | PLMD::Action |  | 
  | getArgument(const unsigned n) const | PLMD::ActionWithArguments | inline | 
  | getArguments() const | PLMD::ActionWithArguments | inline | 
  | getCPT() const | PLMD::Action |  | 
  | getDependencies() const | PLMD::Action | inline | 
  | getDocumentation() const | PLMD::Action | virtual | 
  | getExchangeStep() const | PLMD::Action |  | 
  | getKeyword(const std::string &key) | PLMD::Action |  | 
  | getLabel() const | PLMD::Action | inline | 
  | getName() const | PLMD::Action | inline | 
  | getNumberOfArguments() const | PLMD::ActionWithArguments | inlinevirtual | 
  | getPntrToArgument(const unsigned n) | PLMD::ActionWithArguments | inline | 
  | getProjection(unsigned i, unsigned j) const | PLMD::ActionWithArguments |  | 
  | getRestart() const | PLMD::Action | inline | 
  | getStep() const | PLMD::Action |  | 
  | getStride() const | PLMD::ActionPilot |  | 
  | getTime() const | PLMD::Action |  | 
  | getTimeStep() const | PLMD::Action |  | 
  | interpretArgumentList(const std::vector< std::string > &c, std::vector< Value *> &arg) | PLMD::ActionWithArguments |  | 
  | isActive() const | PLMD::Action | inline | 
  | isOptionOn(const std::string &s) const | PLMD::Action | inline | 
  | keywords | PLMD::Action |  | 
  | PLMD::lockRequests() | PLMD::Action | inlinevirtual | 
  | PLMD::ActionWithArguments::lockRequests() | PLMD::ActionWithArguments | inlinevirtual | 
  | log | PLMD::Action |  | 
  | lower | PLMD::generic::UpdateIf | private | 
  | multi_sim_comm | PLMD::Action |  | 
  | on | PLMD::generic::UpdateIf | private | 
  | onStep() const | PLMD::ActionPilot | virtual | 
  | parse(const std::string &key, T &t) | PLMD::Action |  | 
  | parseArgumentList(const std::string &key, std::vector< Value *> &args) | PLMD::ActionWithArguments |  | 
  | parseArgumentList(const std::string &key, int i, std::vector< Value *> &args) | PLMD::ActionWithArguments |  | 
  | parseFlag(const std::string &key, bool &t) | PLMD::Action |  | 
  | parseNumbered(const std::string &key, const int no, T &t) | PLMD::Action |  | 
  | parseNumberedVector(const std::string &key, const int no, std::vector< T > &t) | PLMD::Action |  | 
  | parseVector(const std::string &key, std::vector< T > &t) | PLMD::Action |  | 
  | plumed | PLMD::Action |  | 
  | prepare() | PLMD::generic::UpdateIf | virtual | 
  | readAtomsFromPDB(const PDB &) | PLMD::Action | inlinevirtual | 
  | registerKeywords(Keywords &keys) | PLMD::generic::UpdateIf | static | 
  | requestArguments(const std::vector< Value *> &arg) | PLMD::ActionWithArguments |  | 
  | runFinalJobs() | PLMD::Action | inlinevirtual | 
  | setOption(const std::string &s) | PLMD::Action | virtual | 
  | setStride(const int &n) | PLMD::ActionPilot |  | 
  | PLMD::unlockRequests() | PLMD::Action | inlinevirtual | 
  | PLMD::ActionWithArguments::unlockRequests() | PLMD::ActionWithArguments | inlinevirtual | 
  | update() | PLMD::Action | inlinevirtual | 
  | UpdateIf(const ActionOptions &) | PLMD::generic::UpdateIf | explicit | 
  | upper | PLMD::generic::UpdateIf | private | 
  | warning(const std::string &msg) | PLMD::Action |  | 
  | ~Action() | PLMD::Action | virtual | 
  | ~ActionWithArguments() | PLMD::ActionWithArguments | inlinevirtual | 
  | ~UpdateIf() | PLMD::generic::UpdateIf |  |