Line data    Source code

       1        1596 :   word_map["setBox"]=cmd_setBox;
       2        1596 :   word_map["setPositions"]=cmd_setPositions;
       3        1596 :   word_map["setMasses"]=cmd_setMasses;
       4        1596 :   word_map["setCharges"]=cmd_setCharges;
       5        1596 :   word_map["setPositionsX"]=cmd_setPositionsX;
       6        1596 :   word_map["setPositionsY"]=cmd_setPositionsY;
       7        1596 :   word_map["setPositionsZ"]=cmd_setPositionsZ;
       8        1596 :   word_map["setVirial"]=cmd_setVirial;
       9        1596 :   word_map["setEnergy"]=cmd_setEnergy;
      10        1596 :   word_map["setForces"]=cmd_setForces;
      11        1596 :   word_map["setForcesX"]=cmd_setForcesX;
      12        1596 :   word_map["setForcesY"]=cmd_setForcesY;
      13        1596 :   word_map["setForcesZ"]=cmd_setForcesZ;
      14        1596 :   word_map["calc"]=cmd_calc;
      15        1596 :   word_map["prepareDependencies"]=cmd_prepareDependencies;
      16        1596 :   word_map["shareData"]=cmd_shareData;
      17        1596 :   word_map["prepareCalc"]=cmd_prepareCalc;
      18        1596 :   word_map["performCalc"]=cmd_performCalc;
      19        1596 :   word_map["performCalcNoUpdate"]=cmd_performCalcNoUpdate;
      20        1596 :   word_map["update"]=cmd_update;
      21        1596 :   word_map["setStep"]=cmd_setStep;
      22        1596 :   word_map["setStepLong"]=cmd_setStepLong;
      23        1596 :   word_map["setAtomsNlocal"]=cmd_setAtomsNlocal;
      24        1596 :   word_map["setAtomsGatindex"]=cmd_setAtomsGatindex;
      25        1596 :   word_map["setAtomsFGatindex"]=cmd_setAtomsFGatindex;
      26        1596 :   word_map["setAtomsContiguous"]=cmd_setAtomsContiguous;
      27        1596 :   word_map["createFullList"]=cmd_createFullList;
      28        1596 :   word_map["getFullList"]=cmd_getFullList;
      29        1596 :   word_map["clearFullList"]=cmd_clearFullList;
      30        1596 :   word_map["read"]=cmd_read;
      31        1596 :   word_map["readInputLine"]=cmd_readInputLine;
      32        1596 :   word_map["clear"]=cmd_clear;
      33        1596 :   word_map["getApiVersion"]=cmd_getApiVersion;
      34        1596 :   word_map["init"]=cmd_init;
      35        1596 :   word_map["setRealPrecision"]=cmd_setRealPrecision;
      36        1596 :   word_map["setMDLengthUnits"]=cmd_setMDLengthUnits;
      37        1596 :   word_map["setMDChargeUnits"]=cmd_setMDChargeUnits;
      38        1596 :   word_map["setMDMassUnits"]=cmd_setMDMassUnits;
      39        1596 :   word_map["setMDEnergyUnits"]=cmd_setMDEnergyUnits;
      40        1596 :   word_map["setMDTimeUnits"]=cmd_setMDTimeUnits;
      41        1596 :   word_map["setNaturalUnits"]=cmd_setNaturalUnits;
      42        1596 :   word_map["setNoVirial"]=cmd_setNoVirial;
      43        1596 :   word_map["setPlumedDat"]=cmd_setPlumedDat;
      44        1596 :   word_map["setMPIComm"]=cmd_setMPIComm;
      45        1596 :   word_map["setMPIFComm"]=cmd_setMPIFComm;
      46        1596 :   word_map["setMPImultiSimComm"]=cmd_setMPImultiSimComm;
      47        1596 :   word_map["setNatoms"]=cmd_setNatoms;
      48        1596 :   word_map["setTimestep"]=cmd_setTimestep;
      49        1596 :   word_map["setKbT"]=cmd_setKbT;
      50        1596 :   word_map["setRestart"]=cmd_setRestart;
      51        1596 :   word_map["doCheckPoint"]=cmd_doCheckPoint;
      52        1596 :   word_map["setMDEngine"]=cmd_setMDEngine;
      53        1596 :   word_map["setLog"]=cmd_setLog;
      54        1596 :   word_map["setLogFile"]=cmd_setLogFile;
      55        1596 :   word_map["setStopFlag"]=cmd_setStopFlag;
      56        1596 :   word_map["getExchangesFlag"]=cmd_getExchangesFlag;
      57        1596 :   word_map["setExchangesSeed"]=cmd_setExchangesSeed;
      58        1596 :   word_map["setNumberOfReplicas"]=cmd_setNumberOfReplicas;
      59        1596 :   word_map["getExchangesList"]=cmd_getExchangesList;
      60        1596 :   word_map["runFinalJobs"]=cmd_runFinalJobs;
      61        1596 :   word_map["isEnergyNeeded"]=cmd_isEnergyNeeded;
      62        1596 :   word_map["getBias"]=cmd_getBias;
      63        1596 :   word_map["checkAction"]=cmd_checkAction;
      64        1596 :   word_map["GREX"]=cmd_GREX;
      65        1596 :   word_map["CLTool"]=cmd_CLTool;